Affiliate Marketing Secrets

I need to track some incoming traffic / links to my site.
I can do it with my current web analytics provider but I have to sort through the statistics myself.
I want to be able to track upto a few thousand referral links eg. www.example.com/?ref=referrer
I want to have them all sorted so that I can just look at how many visitors I recieved from that referral link and how many of those hits were unique etc. etc.
I would also prefer if this is emedable (<— is that even a word)
Like I said before this can be done with many different tracking sites but many of them show the entire incoming traffic for a specific link and I have to sort through each referral link myself.
I need it to be able to track 1000+++ different referral links to 10+ pages recieving 50000+ hits per month.
I need this strictly for time saving.
I hope this is enough information.

an anyone find me a suitable affiliate software?
Must have the following:
1. at least 3 tiers
2. Paid per sale (fixed value or % set by me) Each tier must have different PPS values.
3. only basic functions for affiliates ie. text referral link and ability to see how many successful sales they have referred.
4. Mass payment option for paypal.
Affiliates would be marketing membership for the affiliate network, and receive cuts of the membership fee depending on the tier of the new member.

This would be through a profit sharing agreement. Does youtube allow affiliate referral link ads?
Thanks in advance for your answer.